Software
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PepPre
detect peptide precursors from LC-MS map to promote peptide identification, validation, etc. -
PepFeat
detect peptide features from LC-MS map, and align peptide features of multiple runs (to measure retention time variation) -
ThermoRawRead
extract mass spectrometry data from RAW files of Thermo Fisher instruments -
MgfRead
convert MGF files to compatible formats -
Averagine Model Viewer
online utility to visualize isotope pattern of peptide based on averagine model
Education
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Institute of Computing Technology, Chinese Academy of Sciences
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School of Computer Science and Technology, Shandong University
Publication
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(^: co-first author, *: corresponding author)
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PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors
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Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N-Hydroxysuccinimide Ester Cross-Linkers
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pDeep3: Toward More Accurate Spectrum Prediction with Fast Few-Shot Learning
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Reductive Clustering: An Efficient Linear-time Graph-based Divisive Cluster Analysis Approach