谭永卿 / Tarn Yeong Ching

Software

• 

  PepPre

  detect peptide precursors from LC-MS map to promote peptide identification, validation, etc.
• 

  PepFeat

  detect peptide features from LC-MS map, and align peptide features of multiple runs (to measure retention time variation)
• 

  ThermoRawRead

  extract mass spectrometry data from RAW files of Thermo Fisher instruments
• 

  Averagine Model Viewer

  online utility to visualize isotope pattern of peptide based on averagine model

Education

• Institute of Computing Technology, Chinese Academy of Sciences

  2019-9 to present Ph.D. Student

• School of Computer Science and Technology, Shandong University

  2015-9 to 2019-7 Bachelor

Publication

(^: co-first author, *: corresponding author)

• PepPre: Promote Peptide Identification Using Accurate and Comprehensive Precursors

  2023-5-14 preprint 10.1101/2023.05.13.540645 http://peppre.ctarn.io
  Ching Tarn*, Yu-Zhuo Wu, Kai-Fei Wang

• Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N-Hydroxysuccinimide Ester Cross-Linkers

  2023-7-26 Journal of Proteome Research 10.1021/acs.jproteome.3c00037
  Yong Cao*, Xin-Tong Liu, Peng-Zhi Mao, Zhen-Lin Chen, Ching Tarn, Meng-Qiu Dong*

• pDeep3: Toward More Accurate Spectrum Prediction with Fast Few-Shot Learning

  2021-4-2 Analytical Chemistry 10.1021/acs.analchem.0c05427
  Ching Tarn^, Wen-Feng Zeng^*

• Reductive Clustering: An Efficient Linear-time Graph-based Divisive Cluster Analysis Approach

  2018-6-21 preprint 10.48550/arXiv.1806.08245
  Ching Tarn*, Yinan Zhang, Ye Feng